Prep and Preheat: Preheat your oven to 400°F (200°C). Line a large baking sheet with parchment paper or brush it lightly with a touch of olive oil.
Sear the Polenta: Heat 1 tablespoon of olive oil in a large skillet over medium-high heat. Pan-fry the sliced polenta rounds for 3–4 minutes per side until they form a light, golden-brown crispy crust. Transfer the crispy polenta rounds onto the prepared baking sheet.
Sear the Zucchini: Add the remaining tablespoon of olive oil to the same skillet. Sear the zucchini slices for 1–2 minutes per side to add color and soften slightly. Season lightly with a pinch of sea salt and pepper, then remove from the heat.
Assemble the Stacks: Spoon 1 generous tablespoon of warmed marinara sauce onto each crispy polenta round. Sprinkle a small layer of mixed mozzarella and Parmesan cheese over the sauce. Place one seared zucchini slice firmly on top. Follow with another small spoonful of marinara sauce, a hefty pile of the remaining cheeses, and a dusting of dried Italian seasoning.
Bake and Broil: Bake in the preheated oven for 15–20 minutes until the cheese is completely melted and bubbling. Switch the oven to broil for the final 1–2 minutes to create beautiful golden-brown charred spots on top. Watch closely so it does not burn!
Garnish and Serve: Remove from the oven and let rest for 5 minutes so the layers set. Garnish each stack with fresh sprigs of thyme and serve warm.